KEGG   Zea mays (maize): 541681
Entry
541681            CDS       T01088                                 
Symbol
HDA108
Name
(RefSeq) histone deacetylase 108
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
zma  Zea mays (maize)
Pathway
zma03082  ATP-dependent chromatin remodeling
zma03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:zma00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    541681 (HDA108)
   03083 Polycomb repressive complex
    541681 (HDA108)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:zma03036]
    541681 (HDA108)
Enzymes [BR:zma01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     541681 (HDA108)
Chromosome and associated proteins [BR:zma03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     541681 (HDA108)
   HDAC complexes
    Sin3A-HDAC complex
     541681 (HDA108)
    BRAF-HDAC complex
     541681 (HDA108)
    REST complex
     541681 (HDA108)
    SHIP complex
     541681 (HDA108)
    MiDAC complex
     541681 (HDA108)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     541681 (HDA108)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    541681 (HDA108)
  Chromatin remodeling factors
   NuRD complex
    541681 (HDA108)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 541681
NCBI-ProteinID: NP_001104901
UniProt: Q9ZTP8
Position
4:complement(68666396..68671846)
AA seq 458 aa
MAASGEGVSLPSPAGGEDAHRRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHSLVVHYGL
HRLLELSRPYPASEADIRRFHSDDYVAFLASATGNPGVLDPRAIKRFNVGEDCPVFDGLF
PFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKFH
RRVLYVDIDVHHGDGVEEAFFTTNRVMTVSFHKYGDFFPGTGHITDVGAAEGKHYALNVP
LSDGIDDTTFRGLFQCIIKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGHADCLRF
LRSYNVPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYTLHIQP
KSVENLNTTKDLENIKNMILENLSKIEHVPSTQFHDRPSDPEAPEEKEEDMDKRPPQRSR
LWSGGAYDSDTEDPDSLKSEGKDVTANFQMKDEPKDDL
NT seq 1377 nt   +upstreamnt  +downstreamnt
atggcggcttctggtgagggcgtgtcgctgccgtctccggcgggcggggaggatgcgcac
cgccgccgcgtcagctatttctacgagccgtcgatcggagactactactacgggcaaggt
cacccgatgaagccccaccgcatccgaatggcgcattcgctggtggtccactacggcctc
caccgcctcctcgagctctcccgcccgtacccggcctctgaggccgacatccgccgcttc
cactccgacgactacgtcgctttcctcgcgtccgccaccggaaacccgggtgtcctcgac
ccgcgcgccattaagcgctttaacgtcggtgaggactgccccgtgttcgacggtctcttc
cccttctgccaggcctccgctgggggaagcatcggcgccgccgtcaagcttaaccgcggg
gacgccgacatcaccgtcaactgggcgggcggcctccaccacgccaagaagagcgaggcc
tccgggttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaagttccac
aggcgtgtgctatatgtagacattgatgtccaccatggagatggcgtggaggaggccttc
ttcactacaaaccgagtcatgactgtttcctttcacaagtatggggattttttccctggt
actggacatatcactgacgttggggcagccgaagggaagcattatgctctgaatgttccc
ctgagtgatggtatcgatgacaccacctttcgtggtctgtttcaatgcatcattaagaaa
gttatggaggtttatcagccagacgtggttgtcctccaatgcggagctgactctttggct
ggagacaggttaggttgcttcaacctgtctgtgaagggtcatgctgactgcctccgtttc
cttaggtcgtacaatgttcctatgatggttttaggtggtggaggttacaccatcagaaat
gttgcacgctgctggtgctacgagaccgcagttgctgttggagttgaacctgataacaag
ctgccttacaatgattactatgagtactttggccctgattatactcttcatatccaacca
aaaagtgttgaaaacctgaataccacaaaggacttggagaacataaagaacatgatattg
gagaacctgtcaaagatagaacatgttcccagcactcaattccatgacagaccgtcagac
cctgaagctccagaggagaaagaggaggacatggacaagaggccacctcagcgcagcaga
ttatggagcggaggagcttacgactctgatacagaggatcctgacagcctgaaaagcgag
ggtaaagacgtaactgctaacttccagatgaaggatgaaccaaaagatgatctgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (11)   
   RefSeq(nuc) (1)   
   GenBank (5)   
   EMBL (5)   
Protein domain (1)   
   Pfam (1)   
All databases (26)   

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